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Office of Undergraduate Research Home » 2022 Undergraduate Research Symposium Schedules

Found 4 projects

Poster Presentation 1

11:00 AM to 1:00 PM
CRISPR/Cas9 p38 Gene Deletion Allows for Better Cell Site Manipulation of p38 MAPK
Presenter
  • Rachelle Nhi Tran, Senior, Neuroscience, Communication
Mentors
  • Charles Chavkin, Pharmacology
  • Carlie Neiswanger, Pharmacology
Session
    Poster Session 1
  • Balcony
  • Easel #47
  • 11:00 AM to 1:00 PM

  • Other Pharmacology mentored projects (12)
CRISPR/Cas9 p38 Gene Deletion Allows for Better Cell Site Manipulation of p38 MAPKclose

It is established that stress can promote addictive drug use and relapse in humans with substance use disorders, thus understanding the stress mechanisms responsible is likely important in developing effective treatments for drug addiction. One effect of stress is the stress-induced release of endogenous dynorphin neuropeptide systems in the brain which activate kappa opioid receptors, that in turn stimulate p38 mitogen-activated protein kinase pathway (MAPK). P38 MAPK activation results in the dysphoria experienced during a stress response. We want to learn more about how p38 affects mood and develop efficient CRISPR techniques to manipulate p38 activation. Other techniques of silencing p38 have been used but come with disadvantages. With a CRISPR approach, virus expressing excision sequences for gene editing can be injected into transgenic mice encoding Cre recombinase in a cell-type specific manner. In this study, I tested a CRISPR/Cas9 virus (AAV1-Flex-SaCas9-sqMapk14), designed to excise the p38 gene. As expected, wild type male mice developed significant conditioned place aversion to the KOR agonist, U50,488. In contrast, mice injected with virus bilaterally in the VTA did not acquire aversion. This finding suggested that successful excision of p38 in VTA had occurred. To confirm with immunohistochemistry, I stained CRISPR injected and U50,488 activated brain slices with p38 and phospho-p38 selective antibodies. We expect slices from CRISPR treated mice to show fewer positive cells in the VTA as compared to controls. My characterization of these antibodies is on-going, but preliminary results suggest differences in CRISPR injected and wild type mice. With the development of a technology allowing for efficient manipulation of p38 MAPK within cell site and brain regional specificity, we hope to provide further insight to the stress response and to better understand its role in addiction.


Testing the Mechanisms of Stress Granule Assembly in Human Stem Cell-Derived Cardiomyocytes
Presenter
  • Eric Gery, Senior, Bioen: Nanoscience & Molecular Engr Levinson Emerging Scholar
Mentors
  • Charles Murry, Laboratory Medicine and Pathology
  • Aidan Fenix, Laboratory Medicine and Pathology
Session
    Poster Session 1
  • Balcony
  • Easel #60
  • 11:00 AM to 1:00 PM

  • Other Pathology mentored projects (13)
  • Other students mentored by Charles Murry (2)
Testing the Mechanisms of Stress Granule Assembly in Human Stem Cell-Derived Cardiomyocytesclose

In response to various forms of stress such as heat shock and oxidative stress, cells produce aggregates of mRNA and proteins called stress granules. These granules sequester mRNA and signaling proteins to promote cell survival. Stress granules are beneficial in the short term, but the chronic presence of stress granules can be cytotoxic and cause hyperaggregation of misfolded proteins. After a heart attack, the heart experiences a lack of oxygen, which creates free radicals and metabolic stress. Whether the stress response is involved in this process is unknown, as most research on stress granules and their role in disease comes from work in neuronal and cancer cells. To test whether the stress granule response is conserved across cell types, I cultured cancer cells, pluripotent stem cells, and stem cell-derived cardiomyocytes (heart muscle cells) and subjected these cells to various stresses, including sodium arsenate poisoning, heat shock, and oxidative stress. I imaged each treatment using immunofluorescence and quantified the number of stress granules per cell. The sodium arsenate treatment induced stress granule formation in all three cell types, but surprisingly, the heat shock and oxidative stress treatments had cell type-specific stress granule responses. It is widely believed the stress response is conserved across a range of cell types, but these results indicate some stress pathways differ between cardiomyocytes, cancer cells, and stem cells. To test how stress granules impact cardiomyocyte function, I generated stem cells with knockouts of the two genes required for stress granule assembly: G3BP1 and G3BP2. In future studies, I will differentiate these cells into cardiomyocytes and test whether the inability to form stress granules affects their ability to survive in response to stress. This work is important in understanding the impact stress granules have on the regeneration of heart cells in damaged heart tissue.


Oral Presentation 1

1:30 PM to 3:00 PM
Effect of SARS-CoV-2 ORF7a on Human Pluripotent Stem Cell-derived Cardiomyocytes
Presenter
  • Flora Abrams, Senior, Bioengineering
Mentors
  • Charles Murry, Laboratory Medicine and Pathology
  • Silvia Marchiano, Laboratory Medicine and Pathology
Session
    Session O-1H: Our War on Pathogens: From Understanding our Enemies to Building Better Defenses
  • MGH 271
  • 1:30 PM to 3:00 PM

  • Other Pathology mentored projects (13)
  • Other students mentored by Charles Murry (2)
Effect of SARS-CoV-2 ORF7a on Human Pluripotent Stem Cell-derived Cardiomyocytesclose

Since the beginning of the Severe Acute Respiratory Syndrome-Coronavirus 2 (SARS-CoV-2) pandemic, a large number of COVID-19 patients have suffered a variety of cardiovascular complications. In a previous study from the Murry Lab, human pluripotent stem cell-derived cardiomyocytes (hPSC-CMs) were infected with live SARS-CoV-2 alpha variant, resulting in increased cell death and functional abnormalities. Once infected with SARS-CoV-2 delta variant, hPSC-CMs showed reduced cell death, compared with the ones infected with alpha. The SARS-CoV-2 genome has at least 14 open reading frames (ORFs), which is the transcribed part of a gene. A difference in expressed ORFs can create new variants. The delta variant has 60 amino acid deletions in the ORF7a sequence, resulting in the absence of the ORF7a protein. Thus, I hypothesized that this protein might play a role in cardiomyocytes’ cell death. To demonstrate that this protein has a direct effect on hPSC-CMs cell death, I have created a lentivirus plasmid construct that expresses only ORF7a protein. To assemble the virus, I transfected HEK-293 cells with the ORF7a plasmid with two other plasmids encoding for the packaging and the replication of the lentivirus. Once the virus is ready, I will then infect hPSC-CMs with the lentivirus. If the ORF7a protein is responsible for cell death, we expect to see increased cell death in the hPSC-CMs infected with the ORF7a lentivirus. Showing support of the ORF7a protein inducing harmful effects on cardiomyocytes has the potential to provide valuable insight for scientists to target this particular protein for drug development to combat cardiovascular complications in COVID-19 patients.


Poster Presentation 4

4:00 PM to 5:30 PM
Exploring the Role of Alzheimer’s Disease Risk Gene SORL1 in AMPA Receptor Trafficking
Presenter
  • Lina Park, Senior, Neuroscience Mary Gates Scholar, UW Honors Program
Mentors
  • Jessica Young, Laboratory Medicine and Pathology
  • Charles A Williams, Laboratory Medicine and Pathology
Session
    Poster Session 4
  • Commons East
  • Easel #26
  • 4:00 PM to 5:30 PM

  • Other Laboratory Medicine and Pathology mentored projects (11)
  • Other students mentored by Jessica Young (1)
Exploring the Role of Alzheimer’s Disease Risk Gene SORL1 in AMPA Receptor Traffickingclose
Alzheimer’s disease (AD) is the most common neurodegenerative disease characterized by the progressive loss of synaptic connections, neuronal cell death, and eventually cognition. The accumulation of amyloid-beta proteins is widely recognized to be one of the main etiological bases to AD. SORL1/SORLA is a sorting receptor that plays a critical role in the intracellular trafficking of various proteins, including amyloid precursor protein (APP), which when cleaved, results in toxic amyloid-beta. However, the role of SORLA in the function of synaptic connections between neurons remains unclear. The Young lab explores how the loss of SORL1 impacts the trafficking of a principle excitatory neurotransmitter receptor in the central nervous system, the glutamatergic AMPA receptors. To accomplish this, we differentiate human-induced pluripotent stem cells from homozygous and heterozygous SORL1 knockout (KO) and wild-type (WT) cell lines. Using immunocytochemistry, I quantify the number of AMPARs on the cell surface. To determine if we can rescue the disruption of AMPAR trafficking in SORL1 KO cells, I treat the cells with a small molecule compound (TPT-260). TPT-260 stabilizes a protein complex that interacts with SORL1 and is necessary for intracellular trafficking. I use immunocytochemistry to compare the surface AMPAR population with and without the drug treatment. We hypothesize that intracellular trafficking defects from the loss of SORL1 decrease the trafficking of AMPARs to the cell surface, resulting in abnormal synaptic function. We expect to see the TPT-260 treatment rescue the disrupted AMPAR trafficking. Our results can help elucidate how SORL1 regulates the delivery of AMPARs to synapses and understand a potential mechanism of treatment in AD patients.

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