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Office of Undergraduate Research Home » 2020 Undergraduate Research Symposium Schedules

Found 6 projects

Oral Presentation 1

11:00 AM to 12:30 PM
Applying Trauma Informed Care to Manage Safety & Encourage Resilience in Homelessness Services
Presenter
  • Sam Fredman, Senior, Law, Societies, & Justice Mary Gates Scholar, UW Honors Program
Mentor
  • Stephen Meyers, Law, Societies, and Justice
Session
    Session O-1B: Place, Activism, and Landscapes of Care
  • 11:00 AM to 12:30 PM

Applying Trauma Informed Care to Manage Safety & Encourage Resilience in Homelessness Servicesclose

Homelessness is traumatic. Without shelter, people become more vulnerable to physical, emotional, and psychological harm. For unhoused people, traumatization often manifests in behaviors and vulnerabilities that are incredibly difficult, sometimes dangerous, for service providers to manage. At this time, many social services have acknowledged the importance of trauma informed care, hereafter referred to as TIC, a framework that takes into account the impact of past trauma and the resulting coping mechanisms adopted. My research, an independent study with the Law, Societies, and Justice and Disability Studies programs, aims to understand TIC’s potential to effectively manage the behaviors and address the needs of traumatized clients. Through interviews with service providers caring for young adults experiencing homelessness, I argue that young adult homeless service providers are currently unable to fully address the needs of their clients with histories of traumatization due to a combination of individual, structural, and systemic barriers. As a means to address this, I am in the process of creating a trauma-informed safety and accountability program at ROOTS Young Adult Shelter. The program is informed by interagency interviews and will address trauma, manage behaviors, and support direct service staff in homelessness services through a combination of restorative justice, support group, and individual support models. The efficacy of this program will be researched in relation to safety, accountability, and recidivism. This research has the potential to be widely applicable within social services, particularly shelters. It takes extensive research on the impact of trauma and TIC and applies into an expansive program that providers can use to address the behavioral needs of their clients. Further, it provides qualitative and quantitative research on the implementation of TIC in shelter spaces.


Seasonal Low-Wind Events in the Arctic and Associated Impact on Sea-Ice Melt Parameterization in Climate Models
Presenter
  • Patrick Gavin (Pat) LaChapelle, Senior, Physics: Comprehensive Physics
Mentor
  • Madison Smith, Applied Physics Laboratory, Applied Physics Lab
Session
    Session O-1I: Lithosphere to Biosphere: Volcanoes, Glaciers, Climate Change, and Insects
  • 11:00 AM to 12:30 PM

Seasonal Low-Wind Events in the Arctic and Associated Impact on Sea-Ice Melt Parameterization in Climate Modelsclose

Sea ice plays a significant role in the global climate, but the details of summer melt processes remain poorly resolved. Sustained low-wind events over the Arctic Ocean have been observed to correspond to high salinity and temperature stratification in sea-ice leads, consequently increasing lateral melt rates during summer. Such an effect is currently unaccounted for in leading climate models, and appropriate parameterization could potentially reduce error in projections. We used a wind reanalysis dataset produced by the National Center for Environmental Prediction (NCEP) and the National Center for Atmospheric Research (NCAR) to study wind patterns in the Arctic. We focused on daily variation in oceanic regions at latitudes above 65 degrees during Summer (May 1 - September 30) over 2010-2019. An index of low-wind events was extracted from the reanalysis data and these events were classified according to length of event and geographical extent. Our results suggest that low wind events are frequent throughout the summer, but are not equally distributed spatially across the basin. Low-wind events were compared to other climate data, including sea-ice extent, on a spatial and temporal basis. Our results were compared to climate model output and differences were examined. We propose a basic parameterization of the effect of low-wind events on sea ice melt, and suggest further collection of observational data to improve physical representation in climate models.


Poster Presentation 2

10:05 AM to 10:50 AM
Proteomic Analysis of Transgenic Ube3a Autism Model Mice treated with Rapamycin
Presenter
  • Ryan Mendel, Senior, Biochemistry, Public Health-Global Health Mary Gates Scholar, UW Honors Program
Mentor
  • Stephen Smith, Pediatrics
Session
    Session T-2G: Pediatrics, Pharmacology, Neurological Surgery, Otolaryngology
  • 10:05 AM to 10:50 AM

  • Other Pediatrics mentored projects (23)
  • Other students mentored by Stephen Smith (1)
Proteomic Analysis of Transgenic Ube3a Autism Model Mice treated with Rapamycinclose

Autism spectrum disorders (ASD) are a group of neurodevelopmental disorders characterized by impairments in social interaction and repetitive behaviors. One of the most common mutations leading to ASD is 15q11-q13 duplication, a CNV mutation where extra copies of a chromosomal region are expressed. The major gene within this region is ube3a. My lab has generated a mice model with increased copies of this gene and demonstrated a novel deficit in phosphorylated-AKT, a key protein in the mTOR/AKT signaling pathway. Other mice models of autism have exhibited deficits in this pathway and have rescued behavioral deficits with a drug, rapamycin. Rapamycin is an inhibitor of a key protein of the mTOR/AKT pathway suggesting a similar behavioral rescue might be observed with ube3a transgenic autism model mice. Behavioral testing of 4 groups of 20 mice, wild type and ube3a transgenic mice treated with and without rapamycin, found that there were no baseline social deficits in ube3a transgenic mice not treated with rapamycin. This is not similar to previously published findings and could be due to a number of reasons. It can be difficult to get consistent results with mice behavioral testing. In order to assess if rapamycin had its intended effect in restoring deficit levels of phospho-AKT, protein levels will be assessed. Brain slices from the hippocampus of behaviorally tested mice will be analyzed by western blot, a method of identifying and measuring specific proteins. Successful rapamycin treatment would be observed as increased levels of phospho-AKT, similar to wild type mice. This would suggest that repeated mice behavioral testing is needed and therapeutic treatment of the mTOR/AKT signaling pathway could be a viable target for patients with 15q11-q13 duplication.


Poster Presentation 3

10:55 AM to 11:40 AM
Evaluating Antiretroviral Drug Resistance in HIV-2 Group B
Presenter
  • Pallas Burhen, Senior, Biochemistry Mary Gates Scholar
Mentors
  • Geoffrey Gottlieb, Allergy and Infectious Diseases, Global Health, Medicine
  • Robert Smith, Allergy and Infectious Diseases
Session
    Session T-3G: Medicine, Pharmacy, Pediatrics, & Neurology
  • 10:55 AM to 11:40 AM

  • Other students mentored by Geoffrey Gottlieb (2)
  • Other students mentored by Robert Smith (1)
Evaluating Antiretroviral Drug Resistance in HIV-2 Group Bclose

Human Immunodeficiency Virus (HIV) remains on the forefront of research due to the ongoing global epidemic. HIV is comprised of two genetically different types, HIV-1 and HIV-2. HIV-2 is inherently resistant to some classes of antiretroviral drugs, and many HIV-2 patients develop drug resistance to first-line and subsequent regimens. HIV-2 can further be divided into two distinct genetic groups: A and B. While both are endemic to West Africa, group A accounts for the majority of infections and remains the most studied of the two groups. In-depth knowledge of drug resistance in HIV-2 group B is lacking, as only a few patients with drug-resistant virus are described in the literature and there have been no systematic efforts to characterize the drug resistance patterns of HIV-2 group B isolates in cell culture. My project's goal is to build drug resistance mutations, documented in literature, for HIV-2 group A into a full-length HIV-2 group B infectious molecular clone. Those results are used to compare the relative drug resistance conferred by those mutations to the phenotypes observed for equivalent mutants of HIV-2 group A. More specifically, common drug resistance mutations are introduced into the pol gene of a group B clone, individual mutant clones are isolated, and these are used to transfect replication-competent cells for virus production and drug susceptibility testing. Inhibitors targeting the reverse transcriptase, protease and integrase targets of HIV-2 are evaluated. The resultant drug resistance profiles are then compared to those found in published datasets for HIV-2 group A to determine how HIV-2 group A and group B mutants differ in terms of the magnitude and/or scope of drug resistance. These data are essential for developing evidence-based treatment guidelines for HIV-2–infected patients that harbor drug-resistant group B strains.


A Recombinant Virus Approach to Assessing Drug Resistance in HIV-2 Patients Failing an Integrase Inhibitor-based Regimen
Presenter
  • Jennifer Song, Senior, Biology (Physiology) Mary Gates Scholar, UW Honors Program
Mentors
  • Geoffrey Gottlieb, Global Health, Medicine
  • Robert Smith, Allergy and Infectious Diseases
Session
    Session T-3G: Medicine, Pharmacy, Pediatrics, & Neurology
  • 10:55 AM to 11:40 AM

  • Other students mentored by Geoffrey Gottlieb (2)
  • Other students mentored by Robert Smith (1)
A Recombinant Virus Approach to Assessing Drug Resistance in HIV-2 Patients Failing an Integrase Inhibitor-based Regimenclose

Human immunodeficiency virus (HIV) infection is a significant global health issue, with approximately 75 million infections, and over 35 million deaths, since the beginning of the AIDS pandemic. The majority of these are attributable to HIV type 1 (HIV-1). A second form of HIV – HIV type 2 (HIV-2) – is endemic in West Africa and has spread to other areas with socioeconomic ties to the region. Historically, regimens for first-line treatment of HIV-2 have differed from those used in HIV-1-infected patients due to the intrinsic resistance of HIV-2 to nonnucleoside reverse transcriptase inhibitors. This distinction is coming to an end, as countries throughout West Africa are implementing a new WHO-recommended treatment regimen for first-line treatment of all HIV-infected patients, including those with HIV-2. The regimen, known as TLD, is comprised of the nucleoside reverse transcriptase inhibitors tenofovir and lamivudine and the integrase inhibitor, dolutegravir that has potent activity against both HIV-1 and HIV-2. Although treatment-emergent drug resistance has been well characterized for HIV-2 patients receiving tenofovir and lamivudine, there are few data regarding resistance mechanisms in patients receiving the third component of TLD, dolutegravir. The two objectives of my project are: (1) to construct a system for generating recombinant HIV-2 clones that encode and express integrase sequences from TLD-treated HIV-2 patients, and (2) to determine the in vitro susceptibility of viruses produced from the patient-derived clones to the integrase inhibitor dolutegravir. Specifically, I am engineering a plasmid vector into which patient-derived integrase sequences can be ligated for virus production and drug resistance testing in culture. The plasmid vector produced in this study will be used to characterize novel genetic pathways to dolutegravir resistance in HIV-2 and will help identify patients who are failing TLD treatment due to drug resistance. This information is crucial for improving treatment outcomes in HIV-2-infected individuals worldwide.


Poster Presentation 4

11:45 AM to 12:30 PM
How Does the Bumped Kinase Inhibitor 1553 Affect Transcription Activity of Androgen Receptor in Prostate Cancer?
Presenter
  • Linda Xu, Senior, Microbiology
Mentors
  • Stephen Plymate, Medicine
  • Takuma Uo, Medicine
Session
    Session T-4F: Medicine, Neurosurgery, Pediatrics, Pathology
  • 11:45 AM to 12:30 PM

  • Other Medicine mentored projects (22)
How Does the Bumped Kinase Inhibitor 1553 Affect Transcription Activity of Androgen Receptor in Prostate Cancer?close

Prostate cancer remains the second leading cause of cancer-related deaths of men in the US. Currently, the major challenge is to prevent the tumor cell from gaining the resistance to androgen deprivation therapy which almost inevitably leads to lethal castration-resistant prostate cancer. We are repositioning antiparasitic agents to develop a novel therapy to target androgen receptor (AR) mediated metastatic castration-resistant prostate cancer (mCRPC). Among them, bumped kinase inhibitor (BKI) 1553, which was originally designed to inhibit Toxoplasma calcium-dependent protein kinase 1, has shown to efficiently inhibit AR-dependent prostate cancer growth and AR signaling. Upon binding to its cognate ligand androgen, AR undergoes a conformational change to translocate from the cytoplasm into the nucleus to act as a transcriptional factor. The aim of my project is to identify the target site of BKI 1553 on AR transcription activation pathway. I examined the subcellular localization of AR by using biochemical subcellular fractionation and immunofluorescence assay. I also observed the phosphorylation status of AR via Western blot, and evaluated the level of AR signaling through a luciferase-based reporter assay and quantitative PCR assay of several AR target genes, including PSA, FKBP5, and Nkx3.1. The results of the study reveal the potential site of action of BKI-1553 in AR signaling. This study will provide a better understanding of the mechanism of BKI-1553 on prostate cancer and contribute to the development of a new therapy to mCRPC.


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