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Office of Undergraduate Research Home » 2019 Undergraduate Research Symposium Schedules

Found 14 projects

Poster Presentation 1

11:00 AM to 1:00 PM
International Adoptees within the United States
Presenter
  • Theresa Annmarie Leo, Senior, Politics, Philosophy, & Econ: Intl St
Mentor
  • Benjamin Meiches, Interdisciplinary Arts & Sciences (Tacoma Campus)
Session
    Poster Session 1
  • Commons East
  • Easel #48
  • 11:00 AM to 1:00 PM

International Adoptees within the United Statesclose

International adoption in the United States began during World War II. It was developed as a humanitarian act to aid those orphaned due to the war. Since then international adoption has remained an option for Americans looking to expand their family. The Hague Convention is an international organization aimed at uniting countries in their laws regarding international adoption policy with the intent to ensure the welfare of the child. Since its founding in 1983, the Hague Convention has influenced a total of eighty - three countries including the United States. Despite the intention of the Hague Convention and its member's international adoption still places a child's welfare at higher risk than those of domestically adopted children. International adoptees are victims of human trafficking, abuse, and untimely death. Even the Hague Convention intended to improve international adoption does not advocate countries to use international adoption as a solution to aiding their orphaned population. Permitting an international adoption is promoted as a last resort for the most vulnerable of an already targeted community. The primary intent of this paper advocates for stricter enforcement and potential temporary stall on future international adoptions within the United States. This stance is taken due to issues of lack tracking of international adoptees, the failure of enforcement of international adoption laws currently in place, and the negative impact of the overtly positive marketing of international adoptions. This work intends to bring further awareness of the systemic issues of international adoption that put a child's welfare at risk. Concerning international adoption, this is highly important due to its primarily positive reputation with the general public. This research also intends to provide a solution society may advocate for or further build upon in order to take the measures necessary to ensure the welfare of a child.


Oral Presentation 1

12:30 PM to 2:15 PM
Hopping and Grabbing Insect-Inspired Robot for Space Exploration
Presenters
  • Cat Hannahs, Junior, Aeronautics & Astronautics
  • Maxx Naoyuki (Maxx) Yamasaki, Senior, Extended Pre-Major
Mentor
  • Sawyer Fuller, Mechanical Engineering, U Washington
Session
    Session 1I: Robots Human Systems
  • 12:30 PM to 2:15 PM

  • Other students mentored by Sawyer Fuller (1)
Hopping and Grabbing Insect-Inspired Robot for Space Explorationclose

Small insect-inspired robots have much potential in exploration and have been experiencing a wave of innovation in recent years. Small robots have promise especially in space exploration where each kilogram costs $10,000 to launch, but tiny robots tend to weigh under a gram. However, some problems persist, such as difficulty with landing after flight and hopping mechanisms wearing down after a few uses. Our work focuses on developing a hopping robot that is capable of attaching to an overhanging surface when it jumps and that has durable mechanisms to optimize the number of jumps per bot. The hooking mechanism differs from previous work, usually electrostatic patches, and instead is inspired by the hooked feet of beetles, which is lighter and does not require constant electrical power. For optimizing jumps, we are working to develop a jumping body constructed from and designed for carbon fiber rather than the previously used fiberglass. Carbon fiber has a higher strength to weight ratio and is more elastic than fiberglass, making it efficient for flight and the repetitive motion carried out by the body when bent by the onboard actuator. All designs are created using an iterative design process where parts are micromachined and assembled, then tested for desired qualities. From this, we are aiming to develop an autonomous hopper capable of completing multiple jumps and grabbing without maintenance on any part of the bot.


Poster Presentation 2

1:00 PM to 2:30 PM
Estimating the Upper Bound of Crustal Heat Flow under Antarctica
Presenter
  • Surabhi C. Biyani, Junior, Earth & Space Sciences (Physics), Atmospheric Sciences: Climate NASA Space Grant Scholar
Mentor
  • T.J. Fudge, Earth & Space Sciences
Session
    Poster Session 2
  • Commons East
  • Easel #67
  • 1:00 PM to 2:30 PM

Estimating the Upper Bound of Crustal Heat Flow under Antarcticaclose

Geothermal flux, the amount of heat from the Earth’s interior that reaches the Earth’s surface, is an important boundary value used when modeling ice sheets in Antarctica and estimating future sea level rise. However, geothermal flux is difficult to measure directly. This research project used a numerical ice and heat flow model to estimate the upper bound for geothermal flux under ice domes in Antarctica. We applied this model to ice domes with identifiable Raymond arches, structures in the internal stratigraphy which form only when the ice is frozen to the bed. We estimated the geothermal flux at which an ice dome’s modeled basal temperature reaches the melting point, thus setting an upper bound, using site-specific values for the accumulation rate, surface temperature, and ice thickness. Where measured basal temperatures are known, we made more precise estimates of geothermal flux. Uncertainty values for the modeled flux values were derived by testing the uncertainty of each input value. Model estimates were compared with Martos et al. (2017) and An et al. (2015) geothermal flux estimates derived from remotely sensed data. Comparisons show that in regions such as the Siple Coast, estimates disagree significantly, while they mostly agree in the Antarctic Peninsula. The results of this project set an upper limit on geothermal flux values that can be used to support past and future geothermal flux estimates at these locations.


Role of Paraoxonase 1 in Induced Atherosclerosis
Presenter
  • Gabriela Claravall, Freshman, Pre-Major (Arts & Sciences)
Mentors
  • Judit Marsillach, Medicine
  • Clement Furlong, Genome Sciences, Medicine
  • Nancy Nguyen, Medicine
Session
    Poster Session 2
  • MGH 241
  • Easel #154
  • 1:00 PM to 2:30 PM

Role of Paraoxonase 1 in Induced Atherosclerosisclose

Cardiovascular disease (CVD) continues as the leading cause of death worldwide. The underlying cause of CVD is atherosclerosis, characterized by fatty plaques in the inner walls of the artery, and exacerbated by oxidative stress, inflammation and immune cells. The high-density lipoprotein (HDL)-associated enzyme paraoxonase-1 (PON1) plays a significant role in protecting against CVD. However, the mechanism of PON1’s protection is not well understood. Our laboratory and others have reported a progressive decrease of PON1 activity in several diseases. Our goal is to understand how PON1 prevents oxidative stress and its potential measurement as an early biomarker of risk of disease. Our hypothesis is that oxidative stress inhibits PON1 enzymatic activity, leading to progression of the atherosclerotic process in CVD. The objective of this research is to generate a mouse model to allow us to study the human enzyme PON1 in induced atherosclerosis in vivo.  Starting from two strains of knockout (KO) mice, we have generated the Pon1/apolipoprotein E (apoE) double KO mouse, known to be susceptible to atherosclerosis. We are now crossing this double KO mouse with Pon1 KO mice that express human PON1 (transgenic human PON1 mice, tgHuPON1). We collect ear punches for DNA extraction and blood from the saphenous vein for activity assays. We use polymerase chain reaction (PCR) genotyping methodology, which amplifies DNA, to identify mice that are KO for mouse Pon1 and apoE and that express human PON1. We run enzymatic assays to determine activity levels of the human PON1 in mice. Once we have created the tgHuPON1/apoE KO mouse, we will feed mice with an atherogenic diet, which will induce subclinical atherosclerosis. This knowledge will contribute to understanding the relationship between PON1 and CVD, and will likely generate a useful biomarker for risk of disease.      


Do Not Ignore the Role of Astrocytic Inwardly Rectifying K+ Channel (Kir4.1) In Targeting Alzheimer’s Disease and Parkinson’s Disease
Presenter
  • Eric Shaban Thorland, Junior, Pre-Sciences
Mentors
  • Jing Zhang, Pathology
  • Lifu Sheng, Pathology
Session
    Poster Session 2
  • Balcony
  • Easel #109
  • 1:00 PM to 2:30 PM

  • Other Pathology mentored projects (37)
Do Not Ignore the Role of Astrocytic Inwardly Rectifying K+ Channel (Kir4.1) In Targeting Alzheimer’s Disease and Parkinson’s Diseaseclose

Astrocytes are a type of glial cells in the central nervous system, play a critical role in protecting neuronal signaling by regulating brain homeostasis, synaptic plasticity and transmission, and blood brain barrier functioning in central nervous system. Accumulating evidence has indicated that abnormal behaviors of astrocytic functions, including astrodegeneration and astrogliosis, are implicated as the primary factors contributing to a number of chronic neurodegenerative diseases such as Alzheimer’s disease (AD) and Parkinson’s disease (PD). Kir4.1 is an inwardly rectifying K+ channel expressed on the projections of astrocytes, which serve important roles in the neuroprotective function of astrocytes, such as maintaining K+ homeostasis and regulating extracellular glutamate. Abnormal expression of Kir4.1 has been reported in certain neurodegenerative diseases, including Amyotrophic lateral sclerosis (ALS) and Huntington’s disease (HD), suggesting a vital role in the development of pathophysiology. However, the association between the molecular mechanism and expression of Kir4.1 and the underlying pathogenesis of AD and PD has been largely uninvestigated. In this study, we have had the critical opportunity to access human post-mortem brain tissue, provided by the University of Washington Alzheimer’s Disease Research Center, and conducted confocal microscopy studies. Through a quantitative immunofluorescense staining approach, we expect to demonstrate a distinct expression pattern of Kir4.1 in various brain regions of AD and PD post-mortem tissues when compared to control subjects. Determining the role this protein has in neurodegeneration may provide new insight into the development of therapeutic targets to ameliorate the progression of AD and PD.


Oral Presentation 2

3:30 PM to 5:15 PM
Characterization of Tse7 in Pseudomonas aeruginosa
Presenter
  • Savannah Bertolli, Senior, Biochemistry
Mentors
  • Kaitlyn LaCourse, Microbiology
  • Joseph Mougous, Microbiology
Session
    Session 2J: Measuring Cell Growth and Evolution
  • 3:30 PM to 5:15 PM

  • Other Microbiology mentored projects (17)
  • Other students mentored by Joseph Mougous (2)
Characterization of Tse7 in Pseudomonas aeruginosaclose

Bacteria inhabit a world filled with threats, including antagonism from other species throughout different environmental conditions. One mechanism microbes employ as protection from these hazards is the type VI secretion system (T6SS) - a system bacteria utilize to inject toxic proteins into neighboring cells, leading to cell death. The H1-T6SS of Pseudomonas aeruginosa comprises 7 pairs of toxins and cognate immunity proteins (which prevent self-intoxication). I hypothesized that each of these toxins could be maximally effective against specific kinds of competing bacteria, however the function of many effector proteins is unknown. My research focuses on characterizing the protein Tse7, encoded by the gene PA0099, and elucidating its potential role in species-specific antagonism. To begin, I identified its key functional amino acids and the gene encoding its immunity protein. I designed and created mutant strains with several genes adjacent to PA0099 deleted and co-cultured these with wild-type Pseudomonas aeruginosa to identify any mutants with a loss in competitive fitness. This lead to the discovery that the gene PA0100 encodes the cognate immunity protein. To determine key functional residues, I identified potential candidates using conserved motifs in the toxin’s amino acid sequence. By creating mutants of these residues and analyzing their change in competitive fitness compared to wild type, I recognized histidine 230 as the residue vital for Tse7 function. Going forward, I will attempt to determine whether Tse7 improves fitness of P. aeruginosa against any specific families of bacteria, indicating the toxin targets that particular bacteria. Almost one-third of Gram-negative bacteria have T6SSs. These systems largely dictate the ability of bacterial species to compete with one another, dramatically affecting bacterial community structure and the landscape of human infections. Therefore, this deepened understanding of its function could further our knowledge of and ability to manipulate bacterial interactions’ impact on environmental and human health.


Poster Presentation 3

2:30 PM to 4:00 PM
Stronger Together: An Efficient, Generalizable Approach to Design Biosensors for Small Molecules
Presenters
  • Jay Yung, Junior, Pre-Sciences Undergraduate Research Conference Travel Awardee
  • Angel Tan (Angel) Wong, Senior, Bioengineering, Biochemistry Undergraduate Research Conference Travel Awardee
  • Renaldo Sutanto, Senior, Biology (Molecular, Cellular & Developmental), Biochemistry
  • Joshua C. Ip, Senior, Bioengineering
  • Chemay R. Shola, Junior, Bioengineering Undergraduate Research Conference Travel Awardee
  • Kateka Seth, Senior, Informatics: Data Science, Biochemistry Undergraduate Research Conference Travel Awardee
  • Aerilynn Nha Chi Nguyen, Senior, Biology (Molecular, Cellular & Developmental) Undergraduate Research Conference Travel Awardee
  • William Wei-Wah (William) Kwok, Senior, Informatics Undergraduate Research Conference Travel Awardee
  • Sairandri Sathyanarayanan, Sophomore, Pre-Sciences
  • Charlie Fisher, Senior, Electrical Engineering Undergraduate Research Conference Travel Awardee
  • Vera Onyekachi Okolo, Senior, Anthropology: Medical Anth & Global Hlth, Biology (Molecular, Cellular & Developmental) Undergraduate Research Conference Travel Awardee
  • Hannah Kim (Hannah) Redden, Senior, Biochemistry, Bioengineering UW Honors Program
Mentors
  • Liangcai Gu, Biochemistry
  • Herbert Sauro, Bioengineering
  • Shoukai Kang, Biochemistry
Session
    Poster Session 3
  • Balcony
  • Easel #96
  • 2:30 PM to 4:00 PM

  • Other Biochemistry mentored projects (30)
  • Other students mentored by Liangcai Gu (1)
Stronger Together: An Efficient, Generalizable Approach to Design Biosensors for Small Moleculesclose

Chemically induced dimerization (CID), in which two proteins dimerize only in the presence of a small molecule, has been widely used to control cell signaling, regulatory, and metabolic pathways, and used as logic gates for biological computation in living mammalian cells. However, few naturally occuring CID systems and their derivatives are currently available. Creating a CID system with desired affinity and specificity for any given small molecule remains an unsolved problem for computational design and other protein engineering approaches. To address this challenge, we have used a novel strategy to select CID binders from a vastly diverse combinatorial nanobody library. We have created new CID systems that can sense cholecalciferol and artemisinin. We are validating CID biosensors by a yeast three-hybrid system and built structural models to understand the small molecule-induced dimerization. Our work is a proof-of-concept that can be generalized to create CID systems for many applications.


The Impact of a Novel Combinatorial Immunotherapeutic Regimen on Polyfunctional CD8+ T-Cell Responses in SHIV-Infected Rhesus Macaques
Presenter
  • Jessica Li, Senior, Microbiology UW Honors Program
Mentors
  • Deborah Fuller, Microbiology
  • Sandra Dross, Microbiology
Session
    Poster Session 3
  • Balcony
  • Easel #103
  • 2:30 PM to 4:00 PM

  • Other Microbiology mentored projects (17)
  • Other students mentored by Deborah Fuller (1)
The Impact of a Novel Combinatorial Immunotherapeutic Regimen on Polyfunctional CD8+ T-Cell Responses in SHIV-Infected Rhesus Macaquesclose

During HIV infection, CD8+T-cells are crucial for the control of viral replication. Increased CD8+T-cell polyfunctionality, which is the ability for one cell to perform more than one function within the immune response, was associated with improved clinical outcomes, is now the focus of experimental curative therapies for HIV. One therapy that showed promise is a Conserved Elements DNA (CE) vaccine, which is designed to prime the immune system with essential regions of the virus, thereby eliciting polyfunctionality and circumventing escape mutants. A novel immunotherapeutic combinatorial approach was investigated for the ability to reduce or eliminate viral burden in Simian Human Immunodeficiency Virus (SHIV) infected macaques receiving antiretroviral drug therapy. We evaluated effects of this regimen on CD8+T-cell polyfunctionality and its correlation to viral control after analytical antiretroviral treatment interruption (ATI). Our combinatorial immunotherapy regimen uses the CE vaccine to target highly conserved viral sequences, latency reversal agent GS986, exhaustion reversal agent anti-PD-1, and CCR5 gene editing to delete the co-receptor for viral entry in CD4+T-cells. Analysis of CD8+T-cell polyfunctionality was performed using intracellular cytokine staining and flow cytometry to measure the frequency of CD8+T-cells secreting one or more of the following effector functions: TNFα, IFNγ, IL-2, and both CD107a and Granzyme B. Polyfunctionality induced by the combinatorial regimen was algorithmically quantified and compared to a control group receiving no interventions and a group receiving CE vaccine and CCR5 gene editing alone. Our analysis showed neither significant differences in polyfunctionality between treated and control groups, nor any changes in polyfunctionality within the subset of CD8 targeting conserved regions of the virus. However, we observed diverse viral control post-ATI among all animals, and additional experiments are in progress to determine if CD8 polyfunctionality played a role in improved viral control post-ATI.


Modeling of von Willebrand Disease with Human Stem Cells
Presenter
  • Liam T. Sullivan, Junior, Extended Pre-Major UW Honors Program
Mentor
  • Hongxia Fu, Hematology, Medicine
Session
    Poster Session 3
  • Balcony
  • Easel #109
  • 2:30 PM to 4:00 PM

  • Other Medicine mentored projects (30)
Modeling of von Willebrand Disease with Human Stem Cellsclose

Von Willebrand Disease (VWD) is a bleeding disorder in which von Willebrand Factor (VWF), a polymeric blood protein, is either completely absent or in a dysfunctional state within the circulatory system. VWF’s function is to respond to shear force through an unfolding conformational change, and it is this unfolding and consequential exposure of platelet binding sites that initiates the blood clotting cascade. Affecting 1% of the entire population, VWD is the most common inherited bleeding disorder. However, few effective treatments exist. A major barrier to understanding VWF function is the absence of human cellular and vascular models that can accurately reconstitute complex phenotypes and molecular mechanisms. Studies of VWF at the cellular and vascular scale can provide important insight into physiological factors that regulate VWF. Human cells are particularly attractive and provide a highly accessible, species-specific model that can be more flexible than mouse models. Current cellular models for VWF functional studies are primarily limited to endogenous VWF secreted from human umbilical vein endothelial cells (HUVECs), which are not immortal, making it difficult to engineer disease models. This project serves to directly address these barriers through the creation and characterization of stable VWF knock-out human pluripotent stem cell lines (hPSC). These cells are immortal and can differentiate into numerous lineages including endothelia. VWF knock-out cells differentiated normally into endothelial cells, as expected, based on cell morphology and endothelial marker expression. The VWF knock-out cells have been confirmed through immunoblot and immunofluorescence to be deficient in various VWF-associated proteins, such as Factor VIII and Angiopoietin-2. We are currently investigating the mechanisms behind these deficiencies and how they relate to the absence of VWF. These findings will enable us to better understand the function of VWF, which will ultimately guide us to discover effective treatments for VWD.


Study of Nitrogen-Vacancy Formation in Diamond through High Temperature Annealing
Presenter
  • April Marie Opsvig, Senior, Electrical Engineering
Mentor
  • Kai-Mei Fu, Electrical Engineering, Physics
Session
    Poster Session 3
  • MGH 241
  • Easel #125
  • 2:30 PM to 4:00 PM

  • Other students mentored by Kai-Mei Fu (2)
Study of Nitrogen-Vacancy Formation in Diamond through High Temperature Annealingclose

Quantum sensing applications require diamonds with high concentrations of high-fidelity NV centers. Here we find we can significantly increase the NV center density in high-purity diamond by over a factor of ten by simple annealing. We perform fifteen anneals starting with 800 °C up to 1100 °C. Throughout each anneal, we track thousands of individual NV centers in a large experiment volume (350x350x500 um3) using a custom confocal microscope. Peak NV density was observed to occur at 980 °C. Spectroscopy measurements also show near ideal NV quantum characteristics for the newly formed centers. With this process, we can optimize NV formation for magnetic field sensing and quantum entanglement applications.


Poster Presentation 4

4:00 PM to 6:00 PM
VR and Memory
Presenters
  • Olivia Jean Chicoine, Senior, Industrial Engineering
  • Kristen M. Leierzapf, Senior, Industrial Engineering
  • Qihua (Garret) Yang, Senior, Electrical Engineering
  • Ty Andrew Good, Junior, Industrial Engineering
  • Xiaolu Li, Senior, Industrial Engineering
  • Evan Robert Kirkpatrick, Senior, Industrial Engineering
  • Katherine Justine Tran, Senior, Biochemistry
Mentor
  • Tom Furness, Industrial Engineering
Session
    Poster Session 4
  • MGH 241
  • Easel #161
  • 4:00 PM to 6:00 PM

VR and Memoryclose

Dementia is a neurological condition that impairs memory, cognitive functions, and the performance of daily activities. It is estimated that 5.5 million Americans suffered from dementia in 2018. Currently, the predominant method used to treat persons with dementia is through pharmacological means. However, through reviewing current research, we have found evidence to suggest that cognitive behavior therapies (CBT) may be more beneficial to patients, with the potential to reverse some symptoms of dementia. Our study aims to improve CBT through virtual environments. Virtual Reality (VR) is not merely a visual platform but an immersive environment that stimulates the brain in the same way real environments do. However, in VR we can track certain markers like head and eye movement, metrics that can be valuable in tracking the progression of the disease as well. We have developed a virtual experience that can calm and stimulate seniors while being able to track a person’s ability to perform free recall and spatial recognition through a series of memory games. This experience has the potential to have both therapeutic and diagnostic capabilities, as well as provide insight into how VR can affect memory. Over the past 6 months, our research team has worked with seniors at the Greenwood Senior Center to test different virtual reality platforms such as the Oculus Go and HTC Vive, as well as various virtual environments. Using our experience from the center our team is creating a platform tailored to fit seniors who are affected by dementia. In the near future, our team will be volunteering at a local assisted living facility to work with these seniors. This project will offer understanding of how implementing VR therapy can improve patients’ morale and cognitive capabilities, as well as exploring the use of VR as a diagnostic tool.


Electrohydrodynamic Micro-Robots
Presenter
  • Elma Dedic, Senior, Mechanical Engineering
Mentors
  • Sawyer Fuller, Mechanical Engineering, U Washington
  • Yogesh Chukewad, Mechanical Engineering
Session
    Poster Session 4
  • MGH 241
  • Easel #158
  • 4:00 PM to 6:00 PM

  • Other students mentored by Sawyer Fuller (1)
Electrohydrodynamic Micro-Robotsclose

Efforts to engineer flying micro-robots (~50mg) are motivated by their potential advantages relative to larger robots, such as greater deployment numbers at the same cost. There are significant developments in flapping wing robots at insect-scale; however, little advancement has been made in the development of robots with ionic actuation using electrohydrodynamic (EHD) thrust. This thrust is generated through the ionization of air particles and momentum transfer of these positive ions with neutral air molecules. EHD thrusters have used collector grids and emitter wires to generate a thrust for controlled flight. In this research, we design and fabricate a 1.8 x 2.5 cm micro-thruster that weighs a total of 43 mg including the carbon fiber collector grid, four blue tempered steel emitters, and eight fiber optic glass tubes. This robot is hand-assembled using a laser fabricated external fixture. Electrodes of the robot are fabricated using a laser based system. The whole robot takes a total of 20 minutes to assemble. Emitters are supplied with a high voltage (~2.5kV) using a bundle of 51-gauge insulated copper wires. Similar wire is used for grounding the collector grid. A parametric study is carried out to optimize the physical parameters of the robot. Experiments performed in this research show that the thrust generated is larger than the weight of the robot. 


Enforcing Symmetries and Conservation Laws in Dynamical Systems Inference
Presenter
  • Mason Daniel Kamb, Senior, Computer Science Mary Gates Scholar
Mentors
  • J. Nathan Kutz, Applied Mathematics
  • Steven Brunton, Mechanical Engineering
  • Eurika Kaiser, Mechanical Engineering
Session
    Poster Session 4
  • MGH 241
  • Easel #147
  • 4:00 PM to 6:00 PM

  • Other Applied Mathematics mentored projects (3)
  • Other students mentored by J. Nathan Kutz (1)
Enforcing Symmetries and Conservation Laws in Dynamical Systems Inferenceclose

Dynamical systems are ubiquitous in science and engineering. Inferring the mathematical laws that govern dynamical systems typically requires a 'scientist-in-the-loop' to guide the discovery process, via their expert knowledge and intuition about the system. Getting computers to perform this task automatically, without the guidance of a domain expert in the loop, is a grand challenge in the field of data science. A number of algorithms have been developed to infer such laws. One leading algorithm is Sparse Identification of Nonlinear Dynamics (SINDy), which applies simple linear regression coupled with sparsification to optimize a model over a large library of candidate functions. This algorithm is purely data-driven and makes no use of information that may be known previously about the dynamical system, such as symmetries and conservation laws. In this work, we develop a framework for incorporating and enforcing symmetries and conservation laws in SINDy so that the inferred models are consistent with prior domain knowledge. We analytically show how to propagate symmetries and conservation laws through the SINDy function library, and from this analytically derive linear constraints on the resultant linear regression. These constraints can be incorporated into the regression problem using options available in standard quadratic optimization packages. We implement this method and show that it provides improved accuracy and robustness on the task of inferring several canonical dynamical systems.


SIV-ZIKV Coinfection Affects ZIKV Pathogenesis through Increasing Viral Replication In Vitro
Presenter
  • Brett Knowlton Jones, Senior, Microbiology
Mentors
  • Megan O'Connor, Microbiology
  • Deborah Fuller, Microbiology
Session
    Poster Session 4
  • MGH 241
  • Easel #125
  • 4:00 PM to 6:00 PM

  • Other students mentored by Deborah Fuller (1)
SIV-ZIKV Coinfection Affects ZIKV Pathogenesis through Increasing Viral Replication In Vitroclose

There is a critical lack of knowledge regarding the effects of human immunodeficiency virus (HIV) and zika virus (ZIKV) coinfection in respect to ZIKV pathogenesis, vertical transmission and current vaccine strategies. ZIKV has received global attention because of its clinical complications including congenital malformations during vertical transmission and Guillain-Barré syndrome, a neurocognitive disorder in adults. Recently, ZIKV outbreaks have occurred in tropical and subtropical regions endemic with HIV, therefore it is imperative to understand the impact HIV-ZIKV coinfection may have when moving forward with ZIKV vaccine design. Furthermore, in humans and non-human primates (NHPs) frequencies of blood monocytes increase during HIV and simian immunodeficiency virus (SIV) infection and monocytes are early targets of ZIKV infection. Therefore, we hypothesize that cells from HIV infected individuals have the capacity to harbor increased ZIKV replication and could lead to enhanced ZIKV viremia and pathogenesis. For this study, we use a NHP model to determine the impact of acute SIV infection on ZIKV pathogenesis. We determine ZIKV cellular targets in the blood and preliminary results show an increase in NHP blood monocyte within the first six weeks of SIV infection. We evaluate whether SIV infection increases the susceptibility of cells to ZIKV infection by isolating cells from SIV- and SIV+ animals, infecting them in vitro with ZIKV, and assessing viral replication by plaque assay. Our preliminary findings suggest that in vitro ZIKV replication may increase in cells from SIV+ NHP blood when compared to SIV- blood. Future studies will look at the impact of SIV infection on in vivo ZIKV replication and whether ZIKV replication is enhanced in cells from HIV-infected individuals.


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